MIIDI Input Form

MIIDI Input FormLoad an existing MIIDI report into this form, or just start typing to create a new report. SAVE your report after completing each subsection, for data security. To create a personalized template, click the Provenance tab and follow the instructions.

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MIIDI Input Form
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to add another item below the first, or

to delete one.

Clicking on this link will delete all entered data!

Provenance The provenance of this MIIDI Report.

1. Information about yourself

Click "+" to add an additional author.
As author of this MIIDI Report you need only enter this information once. Having done so, save the partially completed MIIDI Report as a personalized template with an appropriate filename (e.g. MyMIIDITemplate.xml). Then open a copy of this template and save it with a new file name for each MIIDI Report you wish to create.

Your academic title(e.g. Professor, Dr)

Your given name

Your family name

Your professional e-mail address

Institution nameThe institution for which you work

Your present academic position at this institution (job title)

Academic homepageYour academic personal home page, listing your scholarly publications

Date of author's contribution to this report

Comments by the author on the MIIDI report and its content

Comments by the author on his/her contribution to the report

Information about this MIIDI Report

Title of MIIDI Report(Example: MIIDI Report on Jones et al. 2007, doi:*****)

Please enter DOI (Digital Object Identifier) of this MIIDI Report if already assigned (otherwise leave blank)

Author-specific metadata about the provenance of the reportUse this section to add information about the provenance of this report that cannot be added in the existing input fields.

1. Author-defined question

QuestionThis section allows you to add your own question and corresponding answer, that are not included elsewhere in the report.

Answer to author-defined question

1. Author-defined information

This section allows you to add information that cannot be included elsewhere in the report.

TitleA title for the item you want to describe.

Information

Provenance The provenance of this MIIDI Report.

Information about yourself Click "+" to add an additional author.
As author of this MIIDI Report you need only enter this information once. Having done so, save the partially completed MIIDI Report as a personalized template with an appropriate filename (e.g. MyMIIDITemplate.xml). Then open a copy of this template and save it with a new file name for each MIIDI Report you wish to create.

Your academic title(e.g. Professor, Dr)

Your given name

Your family name

Your professional e-mail address

Institution nameThe institution for which you work

Your present academic position at this institution (job title)

Academic homepageYour academic personal home page, listing your scholarly publications

Date of author's contribution to this report

Comments by the author on the MIIDI report and its content

Comments by the author on his/her contribution to the report

Information about this MIIDI Report

Title of MIIDI Report(Example: MIIDI Report on Jones et al. 2007, doi:*****)

Please enter DOI (Digital Object Identifier) of this MIIDI Report if already assigned (otherwise leave blank)

Author-specific metadata about the provenance of the reportUse this section to add information about the provenance of this report that cannot be added in the existing input fields.

Author-defined question

QuestionThis section allows you to add your own question and corresponding answer, that are not included elsewhere in the report.

Answer to author-defined question

Author-defined information This section allows you to add information that cannot be included elsewhere in the report.

TitleA title for the item you want to describe.

Information

Open XML Report Remove File

Save Report

Filename

View or Download Report

The facility to export a report in RDF will be introduced in the future.

Download as HTML

Download as Kipling XML

Download as PDF

The text box below contains the XML representation of your MIIDI report. If this form has become unresponsive due to the session timing out, cut and paste the text into a text editor and save a .txt file, and load it into a fresh input form (see help).

<MIIDI about="_:miidi-report-without-doi" schemaVersion="1.8" dateVersion="2012-05-14" xsi:schemaLocation="http://miidi.org/miidi http://www.miidi.org/schema">
    <infectiousDisease>
        <diseaseName property="obi:OBI_1110040"></diseaseName>
        <specialCharacteristics property="obi:OBI_1110040"></specialCharacteristics>
        <authorSpecificMetadata>
            <questionAnswer>
                <question></question>
                <answer></answer>
            </questionAnswer>
            <item>
                <title></title>
                <information></information>
            </item>
        </authorSpecificMetadata>
    </infectiousDisease>
    <investigationAndResearchGrant>
        <ResearchInvestigation>
            <investigationTitle property="dcterms:title"></investigationTitle>
            <URL property="frapo:ResearchProject"></URL>
            <investigationPurpose></investigationPurpose>
            <principalInvestigator rel="frapo:PrincipalInvestigator">
                <person rel="foaf:person">
                    <name about="foaf:name">
                        <givenNameInitials property="foaf:givenName"></givenNameInitials>
                        <familyName property="foaf:familyName"></familyName>
                    </name>
                </person>
                <memberOfInstitution rel="foaf:member">
                    <institutionName property="frapo:NameOfHostInstitution"></institutionName>
                    <institutionHomePage property="foaf:HomePage"></institutionHomePage>
                </memberOfInstitution>
            </principalInvestigator>
            <investigationFinding>
                <hypothesis>
                    <hypothesis property="obi:IAO_0000415"></hypothesis>
                    <conclusion property="obi:IAO_0000144"></conclusion>
                    <additionalComments></additionalComments>
                </hypothesis>
                <question>
                    <question property="obi:IAO_0000415"></question>
                    <answer property="obi:IAO_0000144"></answer>
                    <additionalComments></additionalComments>
                </question>
            </investigationFinding>
            <researchStudy>
                <studyType resource=""></studyType>
                <studyDescription resource=""></studyDescription>
                <studyTitle property="dcterms:title"></studyTitle>
                <studyPurpose></studyPurpose>
                <studyTechnique></studyTechnique>
                <protocol>
                    <protocolName></protocolName>
                    <protocolURL></protocolURL>
                </protocol>
                <additionalComments></additionalComments>
                <studyResult></studyResult>
                <studyLocation about="dcterms:Location">
                    <country></country>
                    <locationName></locationName>
                    <latitude property="geo:lat"></latitude>
                    <longitude property="geo:long"></longitude>
                    <elevation property="geo:alt"></elevation>
                </studyLocation>
                <temporalDuration about="dcterm:temporal">
                    <startDate about="time:hasBeginning">
                        <date property="time:inXSDDateTime"></date>
                    </startDate>
                    <endDate about="time:hasEnd">
                        <date property="time:inXSDDateTime"></date>
                    </endDate>
                </temporalDuration>
                <studyDetail>
                    <specimens>
                        <livingSubjects>
                            <organismStudied>
                                <organismIdentification>
                                    <commonName></commonName>
                                    <latinName></latinName>
                                    <genotypicPhenotypicCharacteristics></genotypicPhenotypicCharacteristics>
                                </organismIdentification>
                                <organismDiseaseRole property="obo:OBI_0100026"></organismDiseaseRole>
                                <organismDiseaseRoleOther property="obo:OBI_0100026"></organismDiseaseRoleOther>
                            </organismStudied>
                            <diseaseStatus></diseaseStatus>
                            <vaccination>
                                <vaccinationStatus></vaccinationStatus>
                                <vaccinationDate></vaccinationDate>
                            </vaccination>
                            <informedConsent></informedConsent>
                            <ethicalCommitteeDetails></ethicalCommitteeDetails>
                            <ageInformation>
                                <minimumAge></minimumAge>
                                <maximumAge></maximumAge>
                                <meanAge></meanAge>
                            </ageInformation>
                            <subjects>
                                <natureSubjectsStudyPopulation></natureSubjectsStudyPopulation>
                                <numberSubjectsStartStudy></numberSubjectsStartStudy>
                                <numberMalesStartStudy></numberMalesStartStudy>
                                <numberSubjectsEndStudy></numberSubjectsEndStudy>
                                <numberMalesEndStudy></numberMalesEndStudy>
                                <commentsReasonsDiscrepancy></commentsReasonsDiscrepancy>
                            </subjects>
                        </livingSubjects>
                    </specimens>
                </studyDetail>
                <authorSpecificMetadata>
                    <questionAnswer>
                        <question></question>
                        <answer></answer>
                    </questionAnswer>
                    <item>
                        <title></title>
                        <information></information>
                    </item>
                </authorSpecificMetadata>
            </researchStudy>
        </ResearchInvestigation>
        <researchGrantFunding rel="frap:Funding">
            <fundingAgency property="frapo:FundingAgency"></fundingAgency>
            <grantNumber property="frapo:hasGrantNumber"></grantNumber>
            <grantDetails>
                <fundedResearchGrantTitle></fundedResearchGrantTitle>
                <duration rel="dcterms:extent">
                    <startDate property="tint:hasIntervalStartDate" datatype="xs:date"></startDate>
                    <endDate property="tint:hasIntervalEndDate" datatype="xs:date"></endDate>
                </duration>
                <grantHolder rel="frapo:GrantHolder">
                    <person rel="foaf:person">
                        <name about="foaf:name">
                            <givenNameInitials property="foaf:givenName"></givenNameInitials>
                            <familyName property="foaf:familyName"></familyName>
                        </name>
                    </person>
                    <memberOfInstitution rel="foaf:member">
                        <institutionName property="frapo:NameOfHostInstitution"></institutionName>
                        <institutionHomePage property="foaf:HomePage"></institutionHomePage>
                    </memberOfInstitution>
                </grantHolder>
            </grantDetails>
        </researchGrantFunding>
        <authorSpecificMetadata>
            <questionAnswer>
                <question></question>
                <answer></answer>
            </questionAnswer>
            <item>
                <title></title>
                <information></information>
            </item>
        </authorSpecificMetadata>
    </investigationAndResearchGrant>
    <researchOutputs>
        <journalArticle about="http://dx.doi/org/">
            <articleIdentifiers>
                <DOI property="prism:doi"></DOI>
                <pubMedID property="fabio:hasPubMedId"></pubMedID>
            </articleIdentifiers>
            <bibliographicInformation>
                <bibliographicCitation property="dcterms:bibliographicCitation"></bibliographicCitation>
                <author>
                    <authorPerson rel="dcterms:creator">
                        <person rel="foaf:person">
                            <name about="foaf:name">
                                <givenNameInitials property="foaf:givenName"></givenNameInitials>
                                <familyName property="foaf:familyName"></familyName>
                            </name>
                        </person>
                    </authorPerson>
                    <authorOrganisation about="dcterms:creator">
                        <organisation>
                            <name property="foaf:name"></name>
                        </organisation>
                    </authorOrganisation>
                </author>
                <publicationYear property="fabio:hasPublicationYear"></publicationYear>
                <title property="dc:title"></title>
                <journalName></journalName>
                <volumeNumber property="prism:volume"></volumeNumber>
                <issueNumber property="prism:issueIdentifier"></issueNumber>
                <firstPageNumber property="prism:startingPage"></firstPageNumber>
                <lastPageNumber property="prism:endingPage"></lastPageNumber>
                <abstract></abstract>
                <abstractOntologyTerms about="fabio:hasSubjectTerm">
                    <term property="prism:SubjectTerm" content=""></term>
                </abstractOntologyTerms>
            </bibliographicInformation>
            <keywordMeSHHeading about="fabio:hasSubjectTerm">
                <keywordsPhrases property="prism:keyword"></keywordsPhrases>
                <MeSHHeading property="fabio:SubjectTerm"></MeSHHeading>
            </keywordMeSHHeading>
            <supplementaryFiles></supplementaryFiles>
            <supplementaryFileURL></supplementaryFileURL>
            <openAccess>
                <isOpenAccess>false</isOpenAccess>
                <licenseName property="dcterms:license"></licenseName>
            </openAccess>
            <authorSpecificMetadata>
                <questionAnswer>
                    <question></question>
                    <answer></answer>
                </questionAnswer>
                <item>
                    <title></title>
                    <information></information>
                </item>
            </authorSpecificMetadata>
        </journalArticle>
    </researchOutputs>
    <provenance>
        <aboutAuthorOfThisReport about="dcterms:creator">
            <person about="foaf:Person">
                <academicTitle property="foaf:title"></academicTitle>
                <givenName property="foaf:givenName"></givenName>
                <familyName property="foaf:familyName"></familyName>
                <emailAddress property="foaf:mbox"></emailAddress>
                <institutionName property="foaf:member"></institutionName>
                <academicPosition property="frapo:JobTitle"></academicPosition>
                <academicHomepage property="foaf:workInfoHomePage"></academicHomepage>
            </person>
            <dateAuthorInput property="dcterms:modified" datatype="xs:date"></dateAuthorInput>
            <authorCommentsInvestigationOutput></authorCommentsInvestigationOutput>
            <authorContributionMIIDIReport></authorContributionMIIDIReport>
        </aboutAuthorOfThisReport>
        <aboutReport>
            <miidiReportTitle property="dcterms:title"></miidiReportTitle>
            <miidiReportDOI property="prism:doi"></miidiReportDOI>
        </aboutReport>
        <authorSpecificMetadata>
            <questionAnswer>
                <question></question>
                <answer></answer>
            </questionAnswer>
            <item>
                <title></title>
                <information></information>
            </item>
        </authorSpecificMetadata>
    </provenance>
</MIIDI>

Validate Your Report

The version number of this software is: 0.11

Hello!

The MIIDI Input Form permits you to create structured metadata about a research investigation, its component studies, and one or more of its scholarly outputs, e.g. a journal article and a related dataset. Documentation about the underlying MIIDI data model is available at http://www.miidi.org.

Summary of possible actions (explained in more detail below)

Enter data into a blank MIIDI Input Form to create a new MIIDI Report.
Save a template after entering your personal metadata in the Provenance tab.
Open a template or an existing MIIDI Report, either complete or partially completed, using the ‘Open’ tab to select a report from your file system and load it into the MIIDI Input Form, overwriting an data already in the form.
Save your complete or partially completed MIIDI Report as an XML file on your local hard drive with a filename of your choice.
Rescue the content of your partially completed MIIDI Report as a block of XML text, that can then be pasted into a text editor and saved as a .xml file, in the event that your session times out.
View your MIIDI Report as HTML in a new browser window, or download it as an HTML file.
Save your MIIDI Report in Kipling XML format, for loading into Annotum.
[Coming: Save your MIIDI Report in JSON or one of several RDF formats.]
Re-set the MIIDI Input Form – this will result in loss of any existing data.

Creating a template

If, after entering your personal information for the first time, you save the MIIDI Report as a template report, you will be able to re-use this template each time you wish to start a new report, avoiding the chore of having to enter your personal information each time. See the Provenance tab for details.

Saving your MIIDI Report

You may save your template, or your partially completed MIIDI Report, as an XML file to your local hard drive at any time, and return to finish it later. The exact behaviour upon clicking the ‘Save’ tab will depend on your browser setting – either the MIIDI report will be saved to your default directory (e.g. My Downloads) or a dialog box will open, giving you the opportunity to navigate to a directory of your choice. (To change this in FireFox, alter your settings in Preferences / General / Downloads).

It is good practice to save your MIIDI Report after completing each section. Note that your session on the MIIDI server will time out after 30 minutes of inactivity, preventing you from continuing to use the input form. It is therefore important that you ALWAYS save your MIIDI report before leaving your session unattended. Then, even if your session times out, you will be able to load your saved incomplete report into a new blank MIIDI Input Form and continue where you left off.

If you have failed to do this, and find yourself unable to continue because of a time-out, you can still rescue the content of your partially completed MIIDI Report. On the Save tab, click the "To display the report in a text box please click here" link, then manually cut the entire text out of the text box that opens, past it into a text editor, and save as MyMIIDIReport.xml. You will then be able to open this file in a new blank MIIDI Input Form, as described above.

Specifying a file name

It is important that you specify the required filename in the MIIDI Form Save tab, before clicking the ‘Save as XML’ button, rather than subsequently in your browser’s ‘Save’ dialog box, so that the MIIDI system as well as your browser knows what the filename is. Subsequent ‘saves’ will then use the same filename and directory, unless you specify otherwise.

Loading a template or an incomplete MIIDI Report

To load a template, or to reload an existing XML MIDDI Report for completion or correction, click the ‘Load’ tab, use the Browse button to locate your locally saved report, then click the ‘Load’ button to load the saved XML file into the MIIDI Input Form in a browser window. Note that any existing data in the MIIDI Input Form will be over-written by this action.

Entering metadata

If the information requested for certain metadata fields is not available or is not relevant, please leave those fields blank.

Validating your MIIDI Report

You may validate your MIIDI Report after clicking the Validate tab. Validation checks the XML report for required information, e.g. a valid MIIDI Report creation date, and displays a list of any omissions or errors to guide you in correcting them. Any incomplete data field will generate an error, but you may ignore these errors if you are not using that section of the report (e.g. Vaccination Date). Your report can be saved normally even if it has not passed the validation test.

Downloading your MIIDI Report in other formats

As well as being able to save your report as an XML file, you can view it as an HTML page in a Web browser window, or download it as an HTML file. To do this, click the 'html" link on the Save tab page.

To permit a MIIDI report to be published to the Web using Annotum (http://annotum.org/), a scholarly authoring and publishing platform based on WordPress, download the report as Kipling XML by clicking the "Kipling XML" link on the Save tab page. Annotum XML is based on the Kipling subset of the JATS, and will validate via the PMC XML Validator (http://www.pubmedcentral.nih.gov/utils/validate/xmlcheck.cgi). JATS is the National Library of Medicine’s (NLM) Journal Article Tag Suite, aka the Journal Publishing DTD 3.0.

At a later date, the ability to save the report in JSON and various RDF serializations will be added - this requires some ontology mapping that is currently being undertaken.

Save Report

View or Download Report

Validate Your Report

Selected Concept

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